pysinger
  • Overview
  • Build SINGER yourself
  • Mathematical background
  • Data structures
  • Hidden Markov Models
  • MCMC threading
  • I/O and reconstruction
  • API reference
pysinger
  • Overview: module code

All modules for which code is available

  • pysinger.data.arg
  • pysinger.data.branch
  • pysinger.data.interval
  • pysinger.data.node
  • pysinger.data.recombination
  • pysinger.data.tree
  • pysinger.hmm.bsp
  • pysinger.hmm.coalescent
  • pysinger.hmm.emission
  • pysinger.hmm.tsp
  • pysinger.io.tskit_writer
  • pysinger.io.vcf_reader
  • pysinger.mcmc.threader
  • pysinger.rates.rate_map
  • pysinger.reconstruction.fitch
  • pysinger.sampler

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